- Melbourne Children's Regional Infant Brain (M-CRIB) atlas.
- MANTiS: Morphologically adaptive neonate tissue segmentation. An SPM toolbox for tissue classification in T2 weighted MRI scans for neonates.
- DWIMotionCorrect. A modified eddy/motion correction tool which reduces registration bias at b=3000.
- freesurfer_statsurf_display. A set of tools for MATLAB that plots Freesurfer surfaces with each region of a selected cortical parcellation coloured according to p-value/effect size/arbitrary values/freesurfer colours/r squared.
- Marker-based watershed scalper. A fast and robust data driven brain extraction tool for T1 weighted images based on the morphological watershed transform. Versions for human and macaque scans are included.
- Supervised neighbourhood preserving embedding for detecting patterns of variation in MRI scans. Code supporting Ball et al.