DWIMotionCorrect - reducing reigstration bias

Standard usage

DWIEddyCorrectMI -p -m transformfile dwi.nii.gz dwi_mc.nii.gz 0

• -p enables parallel execution (optional)
• -m specifies an output file for saving estimated transforms. Useful as a motion estimate.
• dwi.nii.gz is the image file to be motion corrected
• dwi_mc.nii.gz is the output, corrected image file
• 0 is the index of the image used as the reference in registration

Note that the order of parameters is important, with -p and -m appearing first, if used.